Go read this. It's light on detail for a science bit, but oddly Cthulhic. There's more on midshipmen here - look at the relationships to our physiology.

A few passages for the essence of the thing:

A mysterious hum has been keeping people in Hampshire awake all night ...
...
Male Midshipman fish let out a deep, resonating drone which attracts females and acts as a challenge to other males. ... once they get going can keep up the distracting hum all night. 
... the noise created by the Midshipman is of such a low frequency and long wavelength that it can carry through the ground, walls ...
...
... "I thought I was going mad at first. ..."

The question then: what else might be disturbing our sleep we don't yet know about..?
_